Course talk

This talk follows the OpenMM Application Layer thread and is expanded with the course workflow and examples. The chapters align with the program episodes.

Main PDF

• Download full PDF (beamer)

PDF per episode

• Episode 1: Introduction
• Episode 2: Running simulations
• Episode 3: Preparing and editing the system
• Episode 4: Advanced sampling
• Episode 5: Trajectory analysis
• Episode 6: MSMs with PyEMMA
• Episode 7: MSMs with deeptime

Note: the full PDF and per-episode PDFs are generated from LaTeX/ using the ORcourse/sessions template and the FCTE (UVic-UCC) logo. See the Makefile to build them and copy them to docs/pdf.